The ion and partial charges on protein residues are assigned to a finite rectangular grid using the cloud-in-cell (CIC) scheme.
Part of this potential energy barrier is due the interaction between the crossing ion and the permanent/partial charges on the protein residues.
In addition to natural protein residues, EGAD can also consider free-moving ligands with or without rotatable bonds.
Only short protein residues are able to enter the active site of prolyl endopeptidase due to the distinct beta-propeller region that acts as a gating filter mechanism.
Investigations at Blackwater Draw have recovered protein residue found on Clovis weapons.
When an object is immersed in the gold-particle solution, the particles bind to the protein residue and leave an image of the print.
For example, closing of the channel after optical activation can be substantially delayed by mutating a specific protein residue, C128.
This technique involves washing off the protein residues and then seeking an immunological reaction with commercial anti-sera for different animal species.
Networks of protein residues throughout an enzyme's structure can contribute to catalysis through dynamic motions.
Several protein residues can be methylated, most notably the positive groups of lysine and arginine.